#!/bin/bash # # SlackBuild for rpy2 # # Copyright 2020-2026 Rob van Nues (sborg63@disroot.org) # # Redistribution and use of this script, with or without modification, is # permitted provided that the following conditions are met: # # 1. Redistributions of this script must retain the above copyright # notice, this list of conditions and the following disclaimer. # # THIS SOFTWARE IS PROVIDED BY THE AUTHOR ''AS IS'' AND ANY EXPRESS OR IMPLIED # WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF # MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO # EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, # SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; # OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. cd $(dirname $0) ; CWD=$(pwd) PRGNAM=rpy2 VERSION=${VERSION:-3.6.7} BUILD=${BUILD:-2} TAG=${TAG:-_SBo} SRCREF=RELEASE SRCDELIM="_" SRCNAM=${SRCNAM:-3_6_7} SRCVERSION=$SRCREF$SRCDELIM$SRCNAM MODULE1=${MODULE1:-rinterface} MODULE2=${MODULE2:-robjects} PKGTYPE=${PKGTYPE:-tgz} if [ -z "$ARCH" ]; then case "$( uname -m )" in i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac fi if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 fi TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} if [ "$ARCH" = "i586" ]; then LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then LIBDIRSUFFIX="" elif [ "$ARCH" = "x86_64" ]; then LIBDIRSUFFIX="64" else LIBDIRSUFFIX="" fi set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $PRGNAM-$VERSION #tar xvf $CWD/$PRGNAM-$VERSION.tar.gz tar xvf $CWD/$PRGNAM-$SRCVERSION.tar.gz #cd $PRGNAM-$VERSION cd $PRGNAM-$SRCVERSION chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; ## make sure there is R if ! [ -x "$(command -v R)" ]; then echo 'Error: R is not installed.' >&2 exit 1 fi ## make sure that R has been compiled with ## --enable-R-shlib ## --enable-BLAS-shlib RHOMLIB=$(R RHOME) echo Found R libs: echo $RHOMLIB/lib/* if ! [ "$(readelf -h $RHOMLIB/lib/libR*.so | grep DYN)" ]; then echo "Error: R is not compiled with shared libraries." >&2 exit 1 fi # check where we build, on Slackware stable or on current (stable+) OSVERSION="$(cat /etc/os-release | grep "VERSION_CODENAME" | cut -c 18-)" PYVER=$(python3 -c 'import sys; print("%d.%d" % sys.version_info[:2])') if [[ $OSVERSION == "current" ]]; then echo "Installing on current, into python$PYVER/site-packages/ " elif [[ $OSVERSION == "stable" ]]; then echo "Installing on stable, into python$PYVER/site-packages/ " export PYTHONPATH=/opt/python$PYVER/site-packages/ else echo "Stopping; $OSVERSION is not 'stable' nor 'current, sorry." exit 1 fi ## this removes an error message from setup.py ## https://github.com/rpy2/rpy2/issues/675 export LD_LIBRARY_PATH="${RHOMLIB}/lib:${LD_LIBRARY_PATH}" echo "LD_LIBRARY_PATH set to ${LD_LIBRARY_PATH}" cd $PRGNAM-$MODULE1 # replace deprecated `python3 setup.py build install --root=$PKG` # thanks to fourtysixandtwo python3 -m build --no-isolation python3 -m installer -d "$PKG" dist/*.whl cd ../$PRGNAM-$MODULE2 python3 -m build --no-isolation python3 -m installer -d "$PKG" dist/*.whl cd .. # Remove rpaths: for file in $(find $PKG | xargs file | grep -e "executable" -e "shared object" | grep ELF | cut -f 1 -d : 2> /dev/null) ; do if [ ! "$(patchelf --print-rpath $file 2> /dev/null)" = "" ]; then patchelf --remove-rpath $file echo "\nremoved rpath-file: $file\n" fi done find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM-$MODULE1 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM-$MODULE2 mkdir -p $PKG/usr/share/$PRGNAM-$VERSION/scripts cp -a AUTHORS gpl-2.0.txt NEWS README* $PKG/usr/doc/$PRGNAM-$VERSION cp $PRGNAM-$MODULE1/README* $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM-$MODULE1 cp $PRGNAM-$MODULE2/README* $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM-$MODULE2 cp -a scripts/* $PKG/usr/share/$PRGNAM-$VERSION/scripts cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc ## to facilitate dynamic linking with R, ## libR.so and libRblas.so still need to be found ## https://github.com/rpy2/rpy2/issues/675 ## for this, create "/etc/ld.so.conf.d/Rlibs.conf" with the line ## "/usr/lib${LIBDIRSUFFIX}/R/lib" ## via doinst.sh # thanks to cwilling ## directly cat to package in case no w-permission on $CWD #cat > $CWD/doinst.sh < $PKG/install/doinst.sh < etc/ld.so.conf.d/Rlibs.conf sbin/ldconfig EOF #cat > $CWD/douninst.sh < $PKG/install/douninst.sh < $PKG/install/doinst.sh #cat douninst.sh > $PKG/install/douninst.sh cd $PKG /sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE