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r274 | lh3lh3 | 2007-10-19 09:44:45 +0100 (Fri, 19 Oct 2007) | 3 lines

 * 1.9.1-4
 * rename project name as treebest

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r273 | lh3lh3 | 2007-10-19 09:17:05 +0100 (Fri, 19 Oct 2007) | 2 lines

rename njtree to treebest

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r204 | lh3lh3 | 2007-01-29 10:04:07 +0000 (Mon, 29 Jan 2007) | 2 lines

there is a bug in this tree.

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r197 | lh3lh3 | 2007-01-23 13:04:47 +0000 (Tue, 23 Jan 2007) | 2 lines

add species trees for Ensembl

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r188 | lh3lh3 | 2007-01-18 10:53:36 +0000 (Thu, 18 Jan 2007) | 2 lines

Makefiles for building universal binaries on Intel-Mac

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r186 | lh3lh3 | 2007-01-17 12:53:37 +0000 (Wed, 17 Jan 2007) | 8 lines


 - add quiet mode to "njtree best"
 - fix a bug in phyml when protein alignemnt is bootstrapped.
 - add "fltk-config --post" for flnjtree under Mac OS X
 - fix a typo in spec.*
 - add taxon_id species tree


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r163 | lh3lh3 | 2006-12-04 08:53:49 +0000 (Mon, 04 Dec 2006) | 2 lines

fix a bug when "njtree nj -s spec.nh" is in use.

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r153 | lh3lh3 | 2006-11-30 13:51:05 +0000 (Thu, 30 Nov 2006) | 2 lines

my own branch

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r58 | lh3lh3 | 2006-10-26 08:48:56 +0100 (Thu, 26 Oct 2006) | 3 lines

Add "trimpoor" which is expected to trim sequences that affect the quality of a
gene trees. However, this has not been tested thoroughly.

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r53 | lh3lh3 | 2006-10-25 11:34:40 +0100 (Wed, 25 Oct 2006) | 4 lines


 - fix a bug when packaging
 - release 1.9.1

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r51 | lh3lh3 | 2006-10-24 15:23:38 +0100 (Tue, 24 Oct 2006) | 7 lines


 - add SIS (species intersection score) for duplication nodes
 - :DD=Y now means: Dubious Duplication. Previously it means
   "confirmed duplication".
 - fix a potential bug, although seemingly it has never happened.


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r20 | lh3lh3 | 2006-10-11 09:44:08 +0100 (Wed, 11 Oct 2006) | 2 lines

Remove some obsolete rules

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r16 | lh3lh3 | 2006-10-10 13:58:05 +0100 (Tue, 10 Oct 2006) | 2 lines

improve packaging method

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r15 | lh3lh3 | 2006-10-10 13:06:55 +0100 (Tue, 10 Oct 2006) | 2 lines

change NJTREE version number

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r13 | lh3lh3 | 2006-10-10 11:57:54 +0100 (Tue, 10 Oct 2006) | 3 lines

create dev branch


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r12 | lh3lh3 | 2006-10-10 10:48:55 +0100 (Tue, 10 Oct 2006) | 2 lines

add njtree source codes.

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